publications

Presentations, datasets and software I maintain (cited by concept DOI). Peer-reviewed publications will appear here as they are published.

presentations

2026

  1. The parasitic plant Phelipanche aegyptiaca adapts gene expression to different host species
    Jaret Arnold, Sukhmanpreet Kaur, Clay Wright, and 3 more authors
    Poster, Translational Plant Science Center Symposium, Virginia Tech, Feb 2026
    DOI

datasets

2026

  1. Lobelia silhouettes: digitally restored whole-plant outlines from herbarium specimens (2018–2019)
    Jaret Arnold
    2026
    DOI

software

2026

  1. data-aggregator-mcp: unified research-data discovery across Zenodo, DataCite, NCBI omics, and the literature via the Model Context Protocol
    Jaret Arnold
    2026
    DOI Code
  2. plant-genomics-mcp: 50+ plant-genomics locus-lookup tools over 23 public backends via the Model Context Protocol
    Jaret Arnold
    2026
    DOI Code
  3. ghostcite: deterministic detection of ghost citations and retracted references
    Jaret Arnold
    2026
    DOI Code
  4. jobd: a self-hostable, GPU-aware job broker with native agent (MCP) integration
    Jaret Arnold
    2026
    DOI Code
  5. plantcv-mcp: PlantCV as a measurement instrument over the Model Context Protocol, returning traits with the overlay they came from
    Jaret Arnold
    2026
    DOI Code
  6. phylokit-mcp: phylogenetic inference over the Model Context Protocol, never returning a topology without its support
    Jaret Arnold
    2026
    DOI Code
  7. breedsim-mcp: breeding-scheme simulation over the Model Context Protocol, returning distributions rather than single runs
    Jaret Arnold
    2026
    DOI Code
  8. Taxon3D: a blind comparison benchmark for generative 3D models of organisms
    Jaret Arnold
    2026
    DOI Code