publications

Software I maintain, cited by concept DOI. Peer-reviewed publications will appear here as they are published.

software and datasets

2026

  1. data-aggregator-mcp: unified research-data discovery across Zenodo, DataCite, NCBI omics, and the literature via the Model Context Protocol
    Jaret Arnold
    2026
    DOI Code
  2. plant-genomics-mcp: 50 plant-genomics locus-lookup tools over 23 public backends via the Model Context Protocol
    Jaret Arnold
    2026
    DOI Code
  3. ghostcite: deterministic detection of ghost citations and retracted references
    Jaret Arnold
    2026
    DOI Code
  4. jobd: a self-hostable, GPU-aware job broker with native agent (MCP) integration
    Jaret Arnold
    2026
    DOI Code
  5. plantcv-mcp: PlantCV as a measurement instrument over the Model Context Protocol, returning traits with the overlay they came from
    Jaret Arnold
    2026
    DOI Code
  6. phylokit-mcp: phylogenetic inference over the Model Context Protocol, never returning a topology without its support
    Jaret Arnold
    2026
    DOI Code
  7. breedsim-mcp: breeding-scheme simulation over the Model Context Protocol, returning distributions rather than single runs
    Jaret Arnold
    2026
    DOI Code
  8. ldraw-mcp: real-geometry LDraw/LEGO rendering for vision-capable models over the Model Context Protocol
    Jaret Arnold
    2026
    DOI Code
  9. Taxon3D: a blind comparison benchmark for generative 3D models of organisms
    Jaret Arnold
    2026
    DOI Code